QGIS algorithm - Phenips (grids, days)

Source: R/sagang_phenipsgridsdays.R

QGIS Algorithm provided by SAGA Next Gen Phenips (grids, days) (sagang:phenipsgridsdays). —————- Arguments —————- ATmean: Mean Temperature Argument type: multilayer ATmax: Maximum Temperature Argument type: multilayer SIrel: Solar Irradiation Argument type: multilayer GENERATIONS: Potential Number of Generations Argument type: rasterDestination Acceptable values: - Path for new raster layer ONSET: Onset Day of Infestation Argument type: rasterDestination Acceptable values: - Path for new raster layer ONSET_FILIAL_1: Onset Day, 1. Filial Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer ONSET_SISTER_1: Onset Day, 1. Sister Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer ONSET_FILIAL_2: Onset Day, 2. Filial Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer ONSET_SISTER_2: Onset Day, 2. Sister Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer ONSET_FILIAL_3: Onset Day, 3. Filial Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer ONSET_SISTER_3: Onset Day, 3. Sister Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer BTSUM_FILIAL_1: State, 1. Filial Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer BTSUM_SISTER_1: State, 1. Sister Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer BTSUM_FILIAL_2: State, 2. Filial Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer BTSUM_SISTER_2: State, 2. Sister Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer BTSUM_FILIAL_3: State, 3. Filial Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer BTSUM_SISTER_3: State, 3. Sister Generation Argument type: rasterDestination Acceptable values: - Path for new raster layer LAT_GRID: Latitude (optional) Argument type: raster Acceptable values: - Path to a raster layer LAT_CONST: Latitude Default value: 50 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression DToptimum: Developmental Optimum Temperature Default value: 30.4 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression DTminimum: Developmental Minimum Temperature Default value: 8.3 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression FAminimum: Minimum Temperature for Flight Activity Default value: 16.5 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression DayLength: Minimum Day Length for Flight Activity Default value: 14.5 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression DDminimum: Minimum Thermal Sum for Infestation Default value: 140 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression DDtotal: Thermal Sum for Total Development Default value: 557 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression Risk_DayMax: Day of Maximum Risk after Onset Default value: 5 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression Risk_Decay: Decay of Risk after Maximum Default value: 10 Argument type: number Acceptable values: - A numeric value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression YD_Begin: Begin of Parental Development Default value: 2021-04-01 Argument type: string Acceptable values: - String value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression YD_End_Onset: End of Breeding Default value: 2021-08-31 Argument type: string Acceptable values: - String value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression YD_End: End of Development Default value: 2021-10-31 Argument type: string Acceptable values: - String value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression ATSUM_EFF: Air Temperature Sum Argument type: rasterDestination Acceptable values: - Path for new raster layer RISK: Risk Argument type: rasterDestination Acceptable values: - Path for new raster layer RESET: Reset Default value: true Argument type: boolean Acceptable values: - 1 for true/yes - 0 for false/no - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression DAY: Start Day Default value: 2021-03-24 Argument type: string Acceptable values: - String value - field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field - expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression

sagang_phenipsgridsdays(
  ATmean = qgisprocess:::qgis_default_value(),
  ATmax = qgisprocess:::qgis_default_value(),
  SIrel = qgisprocess:::qgis_default_value(),
  GENERATIONS = qgisprocess:::qgis_default_value(),
  ONSET = qgisprocess:::qgis_default_value(),
  ONSET_FILIAL_1 = qgisprocess:::qgis_default_value(),
  ONSET_SISTER_1 = qgisprocess:::qgis_default_value(),
  ONSET_FILIAL_2 = qgisprocess:::qgis_default_value(),
  ONSET_SISTER_2 = qgisprocess:::qgis_default_value(),
  ONSET_FILIAL_3 = qgisprocess:::qgis_default_value(),
  ONSET_SISTER_3 = qgisprocess:::qgis_default_value(),
  BTSUM_FILIAL_1 = qgisprocess:::qgis_default_value(),
  BTSUM_SISTER_1 = qgisprocess:::qgis_default_value(),
  BTSUM_FILIAL_2 = qgisprocess:::qgis_default_value(),
  BTSUM_SISTER_2 = qgisprocess:::qgis_default_value(),
  BTSUM_FILIAL_3 = qgisprocess:::qgis_default_value(),
  BTSUM_SISTER_3 = qgisprocess:::qgis_default_value(),
  LAT_GRID = qgisprocess:::qgis_default_value(),
  LAT_CONST = qgisprocess:::qgis_default_value(),
  DToptimum = qgisprocess:::qgis_default_value(),
  DTminimum = qgisprocess:::qgis_default_value(),
  FAminimum = qgisprocess:::qgis_default_value(),
  DayLength = qgisprocess:::qgis_default_value(),
  DDminimum = qgisprocess:::qgis_default_value(),
  DDtotal = qgisprocess:::qgis_default_value(),
  Risk_DayMax = qgisprocess:::qgis_default_value(),
  Risk_Decay = qgisprocess:::qgis_default_value(),
  YD_Begin = qgisprocess:::qgis_default_value(),
  YD_End_Onset = qgisprocess:::qgis_default_value(),
  YD_End = qgisprocess:::qgis_default_value(),
  ATSUM_EFF = qgisprocess:::qgis_default_value(),
  RISK = qgisprocess:::qgis_default_value(),
  RESET = qgisprocess:::qgis_default_value(),
  DAY = qgisprocess:::qgis_default_value(),
  ...,
  .complete_output = .complete_output_option(),
  .quiet = .quiet_option(),
  .messages = .message_option()
)

Arguments

ATmean

multilayer - Mean Temperature. .

ATmax

multilayer - Maximum Temperature. .

SIrel

multilayer - Solar Irradiation. .

GENERATIONS

rasterDestination - Potential Number of Generations. Path for new raster layer.

ONSET

rasterDestination - Onset Day of Infestation. Path for new raster layer.

ONSET_FILIAL_1

rasterDestination - Onset Day, 1. Filial Generation. Path for new raster layer.

ONSET_SISTER_1

rasterDestination - Onset Day, 1. Sister Generation. Path for new raster layer.

ONSET_FILIAL_2

rasterDestination - Onset Day, 2. Filial Generation. Path for new raster layer.

ONSET_SISTER_2

rasterDestination - Onset Day, 2. Sister Generation. Path for new raster layer.

ONSET_FILIAL_3

rasterDestination - Onset Day, 3. Filial Generation. Path for new raster layer.

ONSET_SISTER_3

rasterDestination - Onset Day, 3. Sister Generation. Path for new raster layer.

BTSUM_FILIAL_1

rasterDestination - State, 1. Filial Generation. Path for new raster layer.

BTSUM_SISTER_1

rasterDestination - State, 1. Sister Generation. Path for new raster layer.

BTSUM_FILIAL_2

rasterDestination - State, 2. Filial Generation. Path for new raster layer.

BTSUM_SISTER_2

rasterDestination - State, 2. Sister Generation. Path for new raster layer.

BTSUM_FILIAL_3

rasterDestination - State, 3. Filial Generation. Path for new raster layer.

BTSUM_SISTER_3

rasterDestination - State, 3. Sister Generation. Path for new raster layer.

LAT_GRID

raster - Latitude. Path to a raster layer.

LAT_CONST

number - Latitude. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

DToptimum

number - Developmental Optimum Temperature. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

DTminimum

number - Developmental Minimum Temperature. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

FAminimum

number - Minimum Temperature for Flight Activity. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

DayLength

number - Minimum Day Length for Flight Activity. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

DDminimum

number - Minimum Thermal Sum for Infestation. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

DDtotal

number - Thermal Sum for Total Development. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

Risk_DayMax

number - Day of Maximum Risk after Onset. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

Risk_Decay

number - Decay of Risk after Maximum. A numeric value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

YD_Begin

string - Begin of Parental Development. String value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

YD_End_Onset

string - End of Breeding. String value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

YD_End

string - End of Development. String value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

ATSUM_EFF

rasterDestination - Air Temperature Sum. Path for new raster layer.

RISK

rasterDestination - Risk. Path for new raster layer.

RESET

boolean - Reset. 1 for true/yes. 0 for false/no. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

DAY

string - Start Day. String value. field:FIELD_NAME to use a data defined value taken from the FIELD_NAME field. expression:SOME EXPRESSION to use a data defined value calculated using a custom QGIS expression.

...

further parameters passed to qgisprocess::qgis_run_algorithm()

.complete_output

logical specifying if complete out of qgisprocess::qgis_run_algorithm() should be used (TRUE) or first output (most likely the main) should read (FALSE). Default value is TRUE.

.quiet

logical specifying if parameter .quiet for qgisprocess::qgis_run_algorithm() Default value is TRUE.

.messages

logical specifying if messages from qgisprocess::qgis_run_algorithm() should be printed (TRUE) or not (FALSE). Default value is FALSE.

Details

Outputs description

  • ATSUM_EFF - outputRaster - Air Temperature Sum

  • BTSUM_FILIAL_1 - outputRaster - State, 1. Filial Generation

  • BTSUM_FILIAL_2 - outputRaster - State, 2. Filial Generation

  • BTSUM_FILIAL_3 - outputRaster - State, 3. Filial Generation

  • BTSUM_SISTER_1 - outputRaster - State, 1. Sister Generation

  • BTSUM_SISTER_2 - outputRaster - State, 2. Sister Generation

  • BTSUM_SISTER_3 - outputRaster - State, 3. Sister Generation

  • GENERATIONS - outputRaster - Potential Number of Generations

  • ONSET - outputRaster - Onset Day of Infestation

  • ONSET_FILIAL_1 - outputRaster - Onset Day, 1. Filial Generation

  • ONSET_FILIAL_2 - outputRaster - Onset Day, 2. Filial Generation

  • ONSET_FILIAL_3 - outputRaster - Onset Day, 3. Filial Generation

  • ONSET_SISTER_1 - outputRaster - Onset Day, 1. Sister Generation

  • ONSET_SISTER_2 - outputRaster - Onset Day, 2. Sister Generation

  • ONSET_SISTER_3 - outputRaster - Onset Day, 3. Sister Generation

  • RISK - outputRaster - Risk